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Fundamentals of Atmospheric Chemistry Modeling

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Fundamentals of Atmospheric
Chemistry Modeling
Guy P. Brasseur
National Center for Atmospheric
Research
Boulder, CO
Fundamentals of atmospheric
chemistry modeling
Model Philosophy
Fundamantal Equations
Types of models
Numerical Solutions
Examples of Model Results
Data Assimilation and Inverse Modeling
Acknowledgements
Johann Feichter, MPI-M
S. Freitas, INPE/CPTEC
Claire Granier, CNRS and CIRES.
Douglas Kinnison, NCAR
John Mitchell, UKMO
Tim Palmer, ECMWF
Gabrielle Petron, NCAR
Martin Schultz, MPI-M
Philip Stier, MPI-M
Part 1. Model Philosophy
(General Issues)
What is a Model?
A model is:
an idealized representation or abstraction of an object with
the purpose to demonstrate the most relevant or selected
aspects of the object or to make the object accessible to
studies
a formalized structure used to account for an ensemble of
phenomena between which certain relations exist.
Some kind of prototype, image, analog or substitute of a
real system.
An object that is conceptually isolated, technically
manipulated and socially communicated.
What is a Model?
Our brain makes continuously models of what it
perceives; these models may not capture the full
complexity of a system and may be subjective.
Exploratory models have been developed to
help establish theories, and to build a consensus
around these theories (ex: Quantum mechanics,
relativity)
Standard physical models are using
mathematical representations of the established
fundamental laws to predict the behavior of a
system (ex. weather prediction).
What is a Model?
Models can be used to generate knowledge.
They do not produce new concepts or laws that
are not already included in the model formulation
or input, but, by combining a large amount of
information, they produce a system behavior that
cannot be anticipated from simple considerations.
Models are therefore used as diagnostic tools to
analyze a system and understand observational
data, or as prognostic tools to predict the
behavior of a system under yet unknown
situations.
What is a Model?
Models are often abstractions of reality, and are
often associated with the concept of metaphor.
They often capture limited aspects of the functioning
of a system; they simplify reality and focus on a
particular issue; they may not be fully “objective”
and may “embellish” reality.
Developing models can therefore be regarded as
equivalent to writing essays in literature.
In complex mathematical models, the solutions of
the system are not easily obtained. Since in most
cases, no solution exists, numerical approximations
must be found. Supercomputers are needed to
simulate the most complex systems.
What is a Model?
Purpose of models: To obtain a theoretically or
practically manageable system by reducing its
complexity and removing details that are not
relevant for specific consideration.
Citation by Alexander von Humbolt (The
Cosmos): “By suppressing details that distract,
and by considering only large masses, one
rationalizes what cannot be understood through
our senses”.
What is a Model?
Example 1: Architecture
Representation of a
building at the scales of
a shoe box
Wood+acryl instead of
concrete, glas, etc.
Overview of the object
and its relation to the
environment
No details
http://www.werk-plan.de/
What is a Model?
Example 2: Fashion
The ideal person to
present a dress in
the spirit of the
designer
True scale
Flawless/perfect
http://
What is a Model?
Example 3: Climate Model
Climate model are a
mathematical abstraction
of the observed real world
Climate models use
quantitative methods to
simulate the interactions of
the atmosphere, oceans, land
surface, and ice
They follow theoretical
principles and observed
relationships
Model = simplified image
representing the relevant
features
http://www.solarviews.com/cap/earth/
The Earth Simulator in Japan
What is a Model?
It is often assumed that a system is deterministic
and therefore predictable once initial conditions
are specified.
de Laplace: The present state of the universe
should be viewed as the effect of the past state
and the cause of the state that will follow.
von Humboldt: The structure of the universe can
be reduced to a problem of mechanics.
Modern view: Not all aspects of the natural and
social behavior are predictable, and new
formulations must developed (stochastic, systemic
approaches, etc.)
What is a Model?
The deterministic assumption may be correct for certain
processes (Newton’s apple), but may not be in other cases
(turbulent flow).
The weather is predictable for a limited time range (10-15
days, see Lorenz).
Climate is believed to be predictable for a longer period, but
this remains a debated question.
Ensembles of simulations are performed to account for the
internal variability of the model; means and variance are
derived.
Multi-model ensemble simulations are also performed to
estimate the uncertainty in the predictions
Ensemble of precipitation changes (Europe, winter)
Precipitation changes (Europe, DJF)
Different Types of Models
Conceptual Models that help to assess the
consequences of some hypotheses. These
models are usually very simple and focused on
some issue, but trigger interest and sometimes
new research. There is no attempt to reproduce
perfectly the real world. Examples: The Daisy
model of Lovelock (the Earth acts as a
thermostat).
Detailed Models that try to reproduce as closely
as possible the real world. Their success depends
on the level of fidelity in representing real
situations. Examples: Numerical Weather
Forecast Models.
What is a model?
In geosciences, models are used to study the
physical, chemical, and biological processes in the
global environment, and to describe the complex
nonlinear interactions and feedbacks that affect
the Earth system.
MPI-M EARTH SYSTEM MODEL
MOZART
Atmospheric
Chemistry
HAM
Aerosols
ECHAM5
JSBACH
Land surface
Atmospheric
Physics
MPI-OM
Ocean Physics
HAMOCC5
Ocean Biogeochemistry
What is a Model?
Simulation modeling represents a way to create
virtual copies of the Earth in cyberspace. These
virtual copies (often supported by computing
devices) can be submitted to all kinds of forcings
and experiments without jeopardizing the true
specimen.
For example, it is possible to explore the domains
in the Earth system “phase space” that are
reachable without creating catastrophic and
irreversible damage to mankind.
CO2 EMISSIONS PROFILES
under the IPCC SRES scenarios
Temperature change, A2 scenario
Cubasch et al, 2001
Boundary and Initial Conditions
The evolution of a system is often determined by
processes that occurred prior to the temporal domain
under consideration. This influence is expressed by initial
conditions.
Example: Current weather in numerical weather prediction
models; Initial state can be based on observation, and may
require complex and expensive data assimilation procedure.
The evolution of a system depends also on external
forcing.
Example: winds at the surface of the ocean (for an ocean
model) or surface emissions of chemical trace species in a
chemical transport model. Regional (limited domain) models
are very much affected by lateral boundary conditions.
Boundary and Initial Conditions
Initial conditions may have a strong influence at the
beginning of the simulation, while boundary conditions may
have the largest influence at a later stage of the
integration.
Weather prediction is a “initial value” problem (importance of
the data assimilation to initialize the problem)
Climate prediction is often regarded as a boundary condition
problem. However, seasonal forecast is very dependent on
the initial state of the system.
Although the statistical mean of the climate system
appears to be rather predictable, the details of the
dynamical evolution of the system depends strongly on the
initial condition (and other parameters). Ensembles of
realizations must be produced.
Part 2. Fundamental Equations
Variables and Equations in an
Atmospheric (Physical) Model
Variables:
Pressure p
Density 
Temperature T
Wind components (u, v, w)
Equations:
Momentum equation (3 components)
Thermodynamic equation
Continuity equation
Equation of state (perfect gas)
Fundamental Equations
Momentum equations on a rotating sphere:
Express the wind acceleration in response to
different forces: gravity, gradient force, Coriolis
force, dissipation
Thermodynamic equation: Expresses the
conservation of energy; importance of diabatic
heating by absorption and emissions of radiative
energy (solar and terrestrial), and of adiabatic
processes (e.g., compression of air)
Continuity equation: Expresses the conservation
of mass
Fundamental Equations Governing the
Atmosphere Evolution
v
1
 v  v  p  gk  2  v  F visc
t
a
(1), equation of motion
 a
 a v
t
(2), air mass conservation

v  Q
t
(3), first law of thermodynamics
rn
v rn Qrn
t
(4), water mass mixing ratio
conservation
s 
v s  Qs  (5), gases/aerosols mass mixing
t
ratio conservation
Q represents
the
loss/production
rate
S. Freitas, CPTEC, Brazil
Momentum Equation in an Inertial
Frame
dV/dt  - (1 /  )p  [2 V ]  geff  ( /  ) V
2
where
V = (u, v, w) are the 3 components of the wind velocity

p is the pressure (pressure gradient force)
 is the angular rotation velocity of the Earth (Coriolis force)
geff is the effective gravity acceleration (corrected for the
effect of the Earth’s rotation)
 is the air density
t is time
The last term accounts for viscosity in the fluid.
Hadley Cell
Circulation:
Past, Present and
Future
Generalized
atmospheric circulation
in the Indian Ocean
during the Northern
Hemisphere summer
Thermodynamic equation
T
T
Q
 (d  )w  v  T 
t
z
cp
Heat advection
Adiabatic heating
Diabatic
heating/cooling
Sources of diabatic heating/cooling
Absorption of solar radiation and energetic particles
(e.g. ozone)
Chemical heating through exothermic reactions (A +
B -> AB + E)
Collisions between ions and neutrals (Joule
heating)
IR cooling (e.g. CO2 and NO)
Airglow
Solar UV Energy Deposition in the Atmosphere
Continuity Equation

   (  v)  0
t
where
 is the mass density of air
v is the wind velocity vector
Continuity equation for Chemical Species
Mathematically describes the dynamical and chemical processes that
determine the distribution of chemical species
flux form:
Transport
 i
   (  i v)  Si
t
advective form :
Chemical forcing
f i
S
 v  f i  i
t
a
where,
 i is the mass (or number) density of species i
 a is the air mass (or number) density

f i  i is the mass (or volume) mixing ratio
a
Si is the production and loss rate of species i
v is the wind velocity vector
Chemical Composition of the Atmosphere
Concentration of atmospheric trace gas i:
di  i 
 i 
 i 
 i 








dt  t emission  t  deposition  t transport  t chemistry
Model Resolutions
R15
T42
T85
T170
Orography
Depending on the model resolution, the landscape will be
resolved with more or less detail.
Example:
The altitude of the Alps is about 350 m in the T21 resolution
(left)! At 1°x1° (right) the Alps extend to altitudes of about 1.2
km. Obviously, this will impact the flow of air! Note that even a
1x1 grid is far from sufficient to resolve valley flow.
Vertical Coordinate System
Vertical coorinates are usually given either as constant pressure
levels (p), terrain following „“ levels, „hybrid“ coordinates (a
mixture between p and ). Sometimes, z coordinates (alitudes)
are used.
The definition of  coordinates is:
p

ps
...
=0.985
=1
I.e. the actual pressure of a specific model level depends on the
surface pressure for this grid box (and changes with time).
The use of  coordinates facilitates the formulation of the
(physical) conservation equations (see Hartmann, 1994).
Some models number the levels from top to bottom, in others it is bottomtop. Hybrid levels are defined as pi = A·p0+B · ps, where p0 is a constant
reference pressure (100000 Pa).
Some sub-grid process involved at
gases/aerosols transportation
3D Eulerian model grid box
mass
inflow
mass
outflow
z ~ 20-30 km
convective transport by
deep cumulus
convective transport by
shallow cumulus
diffusion
in the PBL
source
wet
deposition
dry
deposition
x ~ 10-100 km
S. Freitas, CPTEC, Brazil
Sub-grid Convective Transport
Cloud venting is a very important mechanism transporting
pollutants from the PBL to the upper levels, affecting the
chemistry of troposphere and the biogeochemical cycles.
12km
deep
subsidence
shallow
4 km
updraft
downdraft
S. Freitas, CPTEC, Brazil
updraft
Updraft detrainment
Static control:
1D cloud model
Environmental
subsidence
Lateral
entrainment
Lateral
detrainment
Downdraft
detrainment
S. Freitas, CPTEC, Brazil
Mass Conservation Equation
1 m ( z )
  
m ( z ) z
 m ( z )  m ( zb ) ( z )
 m ( z ) : cloud base mass flux
b

 ( z ) : normalized mass flux

  /  : entrainment/detrainment mass rates
ztop
updraft
downdraft
zb,d
zdet
zb
1
S. Freitas, CPTEC, Brazil
u
1
d
Model output for PM2.5 column – Aug 2002 :
South American and African biomass burning plumes
From INPE/CPTEC, Brazil
Part 3. Types of ChemicalTransport Models
Types of (atmosphere) models
Box (compartment) models:
understand the principles of feedback cycles
0D (point) models:
detailed analysis of the chemical tendencies for a given
situation; analysis of sensitivities
1D column models:
development of parameterisations
1D Lagrangian (trajectory) models:
transport studies
2D (Eulerian) models:
zonal mean state of the atmosphere (often in stratosphere)
3D (Eulerian) models:
detailed description of several processes in time and
space
Box models
Example: A very simplified box model of the global carbon cycle
fossil fuel
combustion
6 TgC/yr
Atmosphere
615 TgC
60
90
61
92
Land Biosphere
Surface Ocean
730 TgC
840 TgC
0.2
0.2
Sediments
90,000,000 TgC
dmCO Atm
2
dt
  respiratio n   photosynthesis   ocean release   ocean uptake   fossil fuel emissions
0-D (point) models
Idea: investigate the chemistry in an „air parcel“ without
regarding advection or diffusion processes
Long-lived compounds treated as boundary conditions; often
run as „steady state“ simulation
Advantage: computationally very fast, allows for
comprehensive chemical mechanism, Monte Carlo
simulations, etc.
Disadvantage: does not take transport into account
NOx
O3
HO2
2-dimensional models
This type of model has been used primarily in stratospheric
applications, because there the assumption of zonally
homogeneous fields is closer to reality than in the troposphere,
where continents and emission sources produce large
meridional gradients.
Example:
3-dimensional Eulerian models
This model type represents the most comprehensive, but also
computationally most expensive type of models. The earth‘
atmosphere is divided into thousands of „grid boxes“ of more
or less regular shape.
Examples:
Grid box boundaries over Europe for a „T21“ grid with 64x32 boxes
globally (left), and a 1°x1° grid (right)
Part 4. Numerical Solutions
Numerics
Equations, which do not have analytical solutions,
are solved by numerical approximations.
In global models, one uses
Finite Difference Methods
Finite Volume Methods
Spectral Methods
A Model Grid: Solving the equations on specified grid-points
Finite Difference Methods
In these methods, the space derivative are replaced by
finite difference approximations, and the solutions are
produced on specified grid points.
For example, df/dx is approximated by at grid point xj
[f(xj + dx) – f(xj – dx)]/ 2 dx
with a truncation error of O(dx2), if dx is the grid size
Different algorithms exist to solve the differential equation
df/dx = F (f(x), x).
Explicit methods (F is evaluated at point x) require very
small step dx to provide stable and accurate solutions;
Implicit methods (F is evaluated at point x + dx) are more
difficult to solve, but the solution is unconditionally stable.
Spectral Methods
On the sphere, functions can be expressed as a
combination of periodic functions such as an
infinite Fourier expansion. In practical cases, only
a limited number of terms are retained
(truncation). Thus, the contributions of the basis
function beyond a certain wavenumber are
ignored. The fields are expressed by the
coefficients of the Fourier series.
Spectral General Circulation Models frequently
use a spherical harmonics basis for the horizontal
expansion of scalar fields with associated
Legendre functions. Typical truncations are T21,
T42, T63, T106, T170 and beyond.
Model Resolution
R15
T42
T85
T170
Solving the continuity equation for N
chemical species
N species leads to N coupled non-linear equations
which rarely have an analytic solution.
System is solved with numerical methods at
discrete locations (“grid-points”)
Differentials replaced by finite differences
Finite resolution (time or space) implies some
transport processes are unresolved (e.g. diffusion)
Chemistry and transport handled as separate
operations
Part 3. Numerical Solutions
1. Transport
2. Chemistry
3. Surface Processes
Advection
•Desired properties of an advection scheme:
• accuracy
• stability
• mass conservation
• monotonicity (shape preservation)
• positive definite fields
• local
• efficient
•Reviews of transport algorithms are given by Oran and
Boris (1987), Rood (1987), etc.
•Three groups of algorithms:
•Eulerian
•Lagrangian
•Semi-Lagrangian
Advection I: Eulerian Methods
Assume a property (such as the concentration) than is transported
in direction x with a constant velocity c
example : one - dimensional advection equation
 F

0
t x
flux F  c
solved e.g. by the ' leap - frog' method :
t
n
n
F

F
 j1 j1 
x
Stable if Courant - Friedricks - Lewy (CFL)
n1
 n1



j
j
condition is satisfied :
c t
1
x
Advection I: Eulerian Methods
Courant-Friedrichs-Lewy (CFL) condition:
c t
x
 Const , with Const  1
The time step must be small enough, so that an air parcel
does not pass through more than 1 grid box during one
time step.
This is a major restriction for many global models
beacuse near the pole, the CFL condition is often violated
unless very small timesteps are adopted. Eulerian
methods are routinely used in regional models.
Solution: Modified grids towards high latitudes or other
algorithms
Advection I: Eulerian Methods
Other discretizations are possible:
The Euler forward (explicit) scheme is unconditionally
unstable
The Upwind method is diffusive
The Leapfrog method is not monotonic
Improved methods: Smolarkiewicz, Bott, Prather.
The CFL condition must be verified to ensure stability.
Only nonlinear algorithms produce stable solutions,
maintain steep gradients, and preserve monotonicity.
Advection I: Eulerian Methods
The Prather Scheme
In this method, the transported property (tracer mixing
ratio) is expressed in each grid box by a quadratic function
in the x, y, and z directions (including cross terms). This
function is decomposed into orthogonal polynomials over
each grid box. Zeroth, first and second order moments are
calculated over each box.
Transport is performed sequentially in the 3 directions x, y,
and z.
The first step is to decompose the moments for each
gridbox between the fraction for the gridbox that will be
moved by advection into the neighboring box, and the
fraction that will remain in the original box.
Advection I: Eulerian Methods
The Prather Scheme
In the second step, which represents the advection in 1
direction, new moments are calculated in each grid box
through the addition of the moments calculated at the
previous timestep in the two adjacent sub-grid boxes that
contribute to the tracer in a grid box at the new timestep.
Dividing of the moments in a given grid box in submoments, and reforming the moments (by addition of submoments) after an advection step, guarantees
conservation of moments (i.e., mass) during the advection
process.
Advection II: Lagrangian Methods
In Lagrangian schemes, distinct air parcels, in which
tracers are assumed to be homogeneously mixed, are
followed as they are displaced by the winds. In the
absence of source/sinks processes, the tracer mixing ratio
remains constant in the air parcel.
Lagrangian methods are relatively simple in concept and
are not subject to spurious diffusion. Errors can, however,
accumulate over the integration. Typically 100,000 parcels
are used in a global transport model. Parcels may “bunch
up” in certain areas and leave others without parcels to
track. This problem is avoided in the Semi-Lagrangian
methods where at every new time step, one examines the
back trajectory of the parcel that arrives at a given grid
point of the model.
Advection III: Semi-Lagrangian Transport
In semi-Lagrangian transport
schemes, a backward trajectory is
computed for each corner point of a
grid cell. The new mixing ratio f of
species i is then computed by
interpolation („remapping“) of the
concentration field of timestep t0
onto the model grid at timestep t.
Arrival
point AP
(x,t)
(x0,t0)
Thus fAP (x,t) = fDP (x0, t0)
The location of the upstream departure
point is found by solving the equation dx/dt
= v (x, t). This equation has to be solved
iteratively since v varies with along the
back trajectory that needs to be
determined.
Departure
point DP
Advection III: Semi-Lagrangian Transport
x 0  x   t v(x,t)dt
tt
(x, t)
trajectory
Accuracy depends greatly on
Interpolation scheme used.

Common in modern GCMs
(x0, t-∆t)
Advection III: Semi-Lagrangian Methods
The accuracy of the semi-Lagrangian scheme depends on
the accuracy of
The determination of the location of the departure point (DP)
The determination of the tracer mixing ratio at the DP, and
hence on the interpolation scheme that is used. A linear
interpolation leads to excessive smoothing. Cubic
interpolation is preferred, but is computationally expensive.
The major advantage of the SLT method is that it is not
restricted by the CFL condition, and the timestep is chosen
by accuracy considerations. It gives minor phase errors,
minimizes computational dispersion, preserves shapes
and can handle sharp discontinuities
The major disadvantage of the SLT scheme is that it does
not formally conserve integral invariants such as total
mass or energy.
Advection III: Conservative SemiLagrangian Methods
To address this issue, rather than considering variables at
specific grid points, one can transport integral quantities or
average values over finite cell volumes (or cell areas in the
case of 2-D formulations).
In finite-volume-based Semi-Lagrangian methods, the
value of the advected field at a new time level is just the
average value of the departure cell defined by its upstream
position at the previous timestep.
Lin and Rood (1996) have developed a mass conservative
finite volume semi-Lagrangian method, in which the
boundaries (“ departure walls” rather than “departure
points”) of the grid volumes are transported to the next
step (“arrival walls”). Mass is conserved in the box during a
timestep. The CFL restriction does not apply.
Un-resolved transport: Diffusion
example : one - dimensional diffusion equation
    
 K 
t x  x 
K  0 is the so - called diffusion coefficient
Fully explicit solution :
n
 n1


j
j
t
K
n
n
n



2




2
j1
j
j1 
x 
only stable if
2Kt
2 1
x 
Fully implicit solution :
n
 n1


j
j
t
K
n1
n1
n1



2




2
j1
j
j1 
x 
For more than one dimension, each dimension is treated separately
Part 3. Numerical Solutions
1. Transport
2. Chemistry
3. Surface Processes


Chemistry:
Solving df/dt = S/
Simplest method is fully explicit :
f n1  f n  t  S(t n ,f n ) /  a
Euler Forward
f n1 expressed in terms of known quanities
Requires very small time - steps.
Fully implicit is stable for any t :
f n1  f n  t  S(t n1 ,f n1 ) /  a
Euler backward
However, S contains non - linear terms, and
accuracy is comprimised for large t.
Iterative techniques are often used to
improve the accuracy of implicit methods.
Prominent is the Newton-Raphson iteration which requires that
the Jacobian matrix of the chemical system be calculated.
The convergence is achieved for sufficiently small timesteps

Chemical forcing (S)
(i.e. production and loss)
First-order forcing
Photolysis, airglow, …
S(f,x,t)
a
 e(x,t)  A(x,t)  f  B(f,x,t)  f
External forcing
Independent of f
Non-linear forcing
Bi-molecular and
tri-molecular reactions
For N species, A and B are NxN matrices
Chemistry: Solving df/dt = S/
Shimazaki writes the source term
S(f , x, t )
a
 e(x, t )  B(f , x, t )  f
and
f(nm11)  [f n  e (f(nm)1 x , t n 1 )t ] /[1  B(f(nm)1 , x , t n 1 )t ]
Iterations (m) are performed for nonlinear cases.
Hesstvedt proposes a semi-analytic solution
fi n 1  (fi ) ss  [fi  (fi ) ss ] exp(  Bi (fi n , t n 1 )t
n
where
(fi )ss  ei ( x, t ) / Bi (fi
n 1
, x, t )
is the steady-state value. Iterations may be needed.
Chemistry: Solving df/dt = S/
A multi-step method very appropriate for “stiff” systems
has been developed by Gear (1971).
This algorithm is composed of the so-called backward
difference formulas up to order six.
The method is extremely robust and stable but does
require solving nonlinear algebraic systems (like Euler
backward algorithm).
Time step and order of the method are continuously
adapted to meet user-specified solution error tolerances.
Codes require much computer memory and tine; not
practical for multi-dimensional models.
Quasi steady state approximation
If the loss of a chemical species is much faster than its production (and
fast compared to the length of a day), it is generally a reasonable
assumption to assume that it is in „dynamic steady state“, i.e. dX/dt = 0.
Example:
 
 
 
dO 1D
 jO1D  O3  k1  O 1D  M  k2  O 1D  H 2 O
dt
 
dO 1D
0
dt
thus
 
O D 
1
jO1D  O3
k1M  k2 H 2O
Validity of QSSA
reasonable
good
Chemical Families
A „trick“ to make the QSSA approach work
for longer-lived species as well is the
definition of chemical „families“: Species
are grouped together so that the fast
reactions don‘t change the group
concentration.
Example:
NOx = NO + NO2
Emissions
NO
+O3, +HO2
+h
NO2
+OH, deposition
dNO
 Emissions  j NO2  NO2  NOk1  O3  k 2  HO 3 
dt
dNO2
 NO  k1  O3  k 2  HO 3   j NO2  NO2  k3  NO2  OH  deposition
dt
dNOx dNO dNO2


 Emissions  k3  NO2  OH  deposition
dt
dt
dt
Lagrangian models
Lagrangian (or trajectory) models are in fact 3-dimensional in
that they take account of the horizontal and vertical transport of
an air parcel. „We define a transition probability density
Q(X0,t0|X,t), such that the probability that the fluid element will
have moved to within volume (dx,dy,dz) centered at location X
at time t is Q(X0,t0|X,t) dx dy dz.“ (Jacob, 1999)
t0
t
While this approach implicitely accounts for small-scale processes like diffusion or
convection, it has disadvantages, because it neglects mixing of air parcels, and the
quantity Q is not directly observable. One way of using the lagrangian technique
efficiently is the particle model, where Q is approximated by a large number of pointlike particles (~10000), and a trajectory for each particle is computed using stochastic
methods to simulate diffusion. Example: Stohl et al., 2000.
Part 3. Numerical Solutions
1. Transport
2. Chemistry
3. Surface Processes
Model surface description
Rstomatal ∫(PAR, soil moisture)
z (~ 30 m)
z0
depth (~ 60 m)
Sea
Sea ice
Wet surface
Bare soil
Snow/ice
5 soil layers
3.750 (~ 300 km)
Soil moisture
Surface exchanges: emission-deposition
d      
  
  
      c   c     c  
dt  t  em ttchem
 turb   t
 t  chem
 dep  ttemiss
Atmospheric model
surface layer
~ 60 m
chemistry
turbulence
Vegetation model
dry deposition
emissions
Vegetation and wet skin fraction
crown-layer
~ 0.5-15 m
canopy-soil
layer
Emissions (1)
In current models, emissions are typically
specified as monthly mean mass fluxes. These
are read from file and interpolated to time t.
The compilation of emissions inventories is a
labour-intensive task, and these inventories still
constitute one of the major uncertainties in
modeling. Today, first attempts have been made
to estimate emissions based on satellite and insitu observations and using „inverse“ models.
Emissions (2)
Typical categories of „bottom-up“ emissions inventories include:
fossil fuel combustion
biofuel combustion
vegetation fires
biogenic emissions (plants and soils)
volcanic emissions
oceanic emissions
agricultural emissions (incl. fertilisation)
etc.
Example emissions inventory after gridding
Emissions of Carbon Monoxide
Emissions of Nitrogen Oxides
Vegetation fire emissions
„biomass burning“
Classic approach: use forest fire statistics, observations of „fire return
intervals“, and average parameters for fuel load and burning
efficiency, and derive a climatological inventory.
Disadvantage: vegetation fires occur episodically and exhibit a large
interannual variability.
New approach: Use satellite observations of burned areas and
measured or model-derived parameters for the available biomass and
the fire behaviour.
The Global Wildfire Emission Model (GWEM)
J. Hoelzemann
Ei  A    F  EFi
area combustion
burnt efficiency
fuel
load
emission
factor
Biomass Burning NOx Emissions, September
Monthly Carbon Monoxide Emission Estimation for 2002
Hybrid remote sensing fire products: GOES WF_ABBA AVHRR
and GOES (INPE) MODIS (NASA)
September
August
Freitas et al 2005
Duncan et al.2003
EDGAR 3.2
Anthropogenic NOx Emissions
Chemical Weather seen from Space
(Dry) Deposition
Transport of gaseous and particulate species from the atmosphere onto
surfaces in the absence of precipitation
Controlling factors: atmospheric turbulence, chemical properties of
species, and nature of the surface
Deposition flux:
F  vd C
vd: deposition velocity
C: concentration of species at reference height (~10 m)
Resistance analog
1
vd 
Ra  Rb  Rc
Ra = aerodynamic resistance.
Rb = quasi laminar boundary layer resistance
Rc = canopy resistance
atmosphere
Ra
Rb
Rc
surface
Seinfeld & Pandis, 1998
Dry deposition velocity
Ra
Resistance of:
Rb
Resistance of:
dynamic
sublayer
1
Vd 
Ra  Rb  Rc
Rc
Resistance of:
wet surface
interfacial
sublayer
vegetation
sublayer
laminary
sub-layer
stomata
dry surface
Wet deposition
Cloud Water
evaporation
nucleation
dissolution
rain
formation
particles
in air
reactions
below-cloud
scavenging
evaporation
evaporation
chemical reactions
gaseous species
in air
below-cloud
scavenging
Rain, snow
evaporation
chemical reactions
interception
Wet deposition
after Seinfeld&Pandis, 1998
Part 4. Examples
MOZART-2: Model set-up
Uses analysed winds (e.g. ECMWF, NCEP) or
climate model output (T, q, u, v, ps, ...)
Standard chemistry scheme comprises of 65
species and 170 reactions. Chemistry is easily
adaptable by means of a preprocessor code
Runs efficiently on almost any computer platform
(parallel and vectorized)
Flexible output specification; postprocessing tools
available
Brasseur et al., JGR, 1998; Horowitz et al., JGR, 2004.
Parameterisations
Model physics according to Rasch et al., 1997
Boundary layer: Holtslag and Boville, 1993
Advection: Lin and Rood, 1996
Convection: Zhang and McFarlane, 1995; Hack,
1994
Dry deposition: Wesely, 1989, Hess et al., 2000
Scavenging: Giorgi ad Chameides, 1985; Brasseur
et al., 1998
Lightning NOx production: Price, Penner, and
Prather, 1997
Model resolution and computer
resources
Regular grid, standard resolution approx. 1.9°1.9°
(19296 grid boxes), 31 vertical levels 1000-10
hPa
Code allows for arbitrary regular grid. Tested
between 3.8°3.8° (9648 grid boxes) and
1.1°1.1° (256128 grid boxes)
Hybrid coordinates (sigma-pressure) for vertical
grid
Standard run uses about 4GB memory and needs
120 CPU hours for one simulation year (8 CPUs,
NEC SX-6)
Results from simulation May 2003
Ozone Lindenberg, May 2003
1890
CO emissions
2000
2100- A2
1890
NOx emissions
2000
2100-A2
Surface Ozone July 1890
Surface Ozone July 2000
Surface Ozone July 2100
A2 Scenario SRES
CO
Changes in the surface
concentration
between 2000 and 2100
July Scenario A2
No climate change
NOx
O3
AEROSOLS
HAM: The Aerosol Model Component
• Resolves aerosol distribution by seven log-normal
modes
• Components:
Sulfate, Black Carbon, Organic Carbon, Sea Salt, Dust
composition
mixing state
size distribution
HAM - Aerosol Representation
Considered Compounds:
Sulfate
Black
Carbon
Organic
Carbon
Sea Salt
Mineral Dust
Resolve aerosol size-distribution by 7 log-normal modes
Each mode is described by three moments
2. ECHAM5-HAM
Global Aerosol Distribution
3.1 Global Distribution
Part 5. Inverse Modeling
Data Assimilation and Inverse Modeling
Data are often used to independently verify model
results.
However, data can also be used to constrain a
model. Recognizing that errors are associated
with both observational data and models, the most
probable solution is probably located “between”
the observational data and the model values. Key
in the search for the optimal value is the
quantitative estimate of these errors.
Data assimilation procedures are now applied to
chemical quantities measured for example from
space.
Data Assimilation and Inverse Modeling
Forward models often attempt to calculate
relatively well-known quantities based on poorly
quantified data.
Example: When calculating the atmospheric
concentration of chemical species based on
specified emissions, the atmospheric
concentration is much better known than the
emissions used to ‘force’ this “forward” model
Therefore, what is often more interesting is to
derive the emissions from our knowledge of the
atmospheric concentration: This refers to inverse
modeling.
Principle of Inverse Modeling
The discrepancies between the observed
and the modeled CO distributions are used
to optimize poorly known parameters in the
model – here, CO surface emissions.
March 2000 Total column of CO :
MOZART2 (top) and MOPITT (bottom)
MAR MOZART2, CO-column, scale=1.e17
60
40
27.5
.0
25
25 .0
20.
0
22.5
17
.5
20
20.
0
15.0
30.0
17.5
0
20.
25.0
.5
22
20 .0
17 .5
0
25.
27 .5
15.0
22.5
0
15.0
12.5
17 .5
12.5
-20
27.5
-40
-60
-100
22.5
17 .5
25.0
0
20.
.5
27
20.0
.5 .0
273
0
.5
22
22
.5
17 .5
0
20. .5
17
0
15.
15
.0
0
25
.0
.0
25
20
CO-column, scale=1.e17
25
.0
27
.5
100
22.5
40
MAR MOPITT,
25.
0
22
.5
60
0
Longitude
20.0
-20
12 .5
-40
17.
5 0
15.
.0
10
10.0
-60
-100
0
Longitude
100
Modeled
distribution of [CO]
2.
Observed
distribution of
[CO]
Tropospheric Chemistry and
Transport discrete equations
Inverse
modeling
1.
A priori Emissions xb
3.
MOPITT
data
product
Hypothesis
Transport in the model is perfect (for the CMDL/IMAGES inversion)
Statistics of the observations known (mean and cov matrix)
Statistics of the a priori sources known
All Errors are gaussian and independent
Chemistry weakly non linear. CO sink not optimized.
a posteriori sources close ENOUGH to a priori
 no big change in
[OH]
 Use linearized version of the model
Synthesis Inversion
No : number of observations
Ne : number of emission variables to be
optimized
Ne < No to have an over-determined problem
Monthly Emissions are aggregated over
continents or oceans (see next slide)
Observation Matrix M : ymodel=Mx
M links the sources to [CO] at observed locations
[CO]model|station j = S Mji . xi = S [CO]ji
Observations
observations
Ascension Island
total modeled [CO] with xb
100
+ agricultural waste burning
and fuel wood use
90
+ forest and savanna
burning over Southern
Africa
+ forest and savanna
burning over Southern
America
+ forest and savanna
burning in Northern
Hemisphere and Oceania
+ technological activities
80
70
[CO] ppbv
Modeled total
[CO]
60
50
40
30
+ vegetation/soil
20
oceanic emissions
10
0
1
2
3
4
5
6
7
Month
8
9
10 11 12
Problem in
timing !!!
Biomass burning
South Africa
The solution xa of the inverse
problem minimizes a cost function
1
1
J (x)  (M(x)  y) O (M(x)  y)  (x  xf ) Bf (x  xf )
T
T
Symbol
Signification
Dimension
xa
a posteriori emissions
Ne
xf
a priori emissions
Ne
y
Observed concentrations
No
Bf
COV Errors on the a priori emissions
Ne*Ne
Ba
COV Errors on the a posteriori emissions
Ne*Ne
O
COV Errors on the observed
concentrations
No*No
M
Model Operator + Linear Interpolation
= Observation Matrix ymodel=Mx
No*Ne
J (x)  (M(x)  y)T O1 (M(x)  y)  (x  xf )T Bf 1 (x  xf )
Weights
~“Inverse of Uncertainties”
[Distance ( [CO] modeled – [CO] observed )]2
[Distance (a priori emission – a posteriori emissions)]2
Simple Geometry
Observed
[CO]
A priori
modeled CO
A posteriori
modeled CO
xa
M(xa)
xf
EMISSIONS
space
y
M(xf)
Observation
space
Optimal Interpolation
Analytical solution xa exists for linear problem (or
weakly non-linear)
x a  x f  K ( y  Mx f )
K  B f M (MB f M  O)
T
T
y-Mxf : residual
1
B a = ( I - KM )B f
Ba : a posteriori uncertainties
for xa
= “new information”
K : gain matrix
K (Ne*No) projects the
residual in the emissions space
Comparison of MOZART results with in
situ CMDL data
CMDL
data
post
prior
+ a priori
modeled [CO]
* a posteriori
modeled [CO]
Conclusions
The combined use of MOPITT data together with the
MOZART model and a priori inventories for CO
emissions
= promising tool for the optimization of CO sources.
Several prominent features are reproduced :
biofuel in Asia.
biomass burning in Australia.
change in the timing of biomass burning emission
peak in SH.
•
The optimized emissions have been validated using
independent data
Thank you!
The End
Bibliography
Holton, J.R., An Introduction to Dynamic Meteorology,
Academic Press, San Diego,1992.
Peixoto, J.P., and Oort, A.H., Physics of Climate, Springer,
New York, 1992.
Jacobson, M.Z., Fundamentals of atmospheric modeling,
Cambridge University Press, Cambridge, New York, 1999.
Brasseur, G.P., Orlando, J.J., and Tyndall, G.S.,
Atmospheric Chemistry and Global Change, Oxford
University Press, Oxford, New York, 1999.
Hartmann, D.L., Global Physical Climatology, Academic
Press, San Diego, 1994.
Durran, D.R., Numerical Methods for Wave Equations in
Geophysical Fluid Dynamics, Springer, New York, 1998.
Impact of Climate Change on Tropospheric Temperature
and Water Vapor Concentration
2000 to 2100
SRES A2 Scenario
Temperature
Water vapor
Impact of Climate Change on NOx
Production by Lightning
2000 to 2100
SRES A2 Scenario
CO
Impact of Climate Change
on the Chemical Composition of
the Atmosphere (July)
2000 to 2100
SRES A2 Scenario
NOx
Ozone
The ECHAM5-HAM Aerosol Model
Sulfur Chemistry 
ECHAM5 (Roeckner et al., 2003)
HAM (Stier et al., 2004)
(Feichter et al., 1996)
MOZART Chemistry
(Horowitz et al., 2003)
Size-Dependent Dry- and Wet-Deposition
(Ganzeveld et al., 1998; Slinn and Slinn, 1982; Stier et al., 2004)
Online emissions of Dust, Sea Salt, and DMS
(Tegen et al., 2002; Schulz et al., 2002; Kettle and Andreae, 2000)
Aerosol Microphysics M7
(Vignati, Wilson, and Stier, 2004)
•
•
•
•
•
Nucleation of sulfate particles
Condensation of sulfate on existing particles
Coagulation
Inter-modal transfer
Thermodynamical equilibrium with water vapour
Radiation Module
(Boucher and Stier)
Cloud Microphysics - Aerosol Activation
(Lohmann et al., 1999; Lohmann, 2002; Zhang et al., in press;
Lin and Leaitch, 1997; A.-Razzak and Ghan, 2000)
2. ECHAM5-HAM
Simulations with the ECHAM5-HAM aerosol-climate
model:
• Resolution
horizontal: T63  1.8 x 1.8 on Gaussian grid
vertical:
31 levels from surface up to 10 hPa
• Nudging to ECMWF ERA-40 meteorology for year 2000
• AEROCOM year 2000 emission inventory
Evaluation of Number Densities
Aircraft-campaign composite profiles of aerosol number-concentrations
Scotland
(27/09/-12/10/2000, 9W-4E, 57N-61N)
Chile
(23/03/-14/04/2000, 84W-69W, 59S-51S)
Measurement data by courtesy of Andreas Petzold and Andreas Minikin (DLR)
3.1 Global Distribution
Microphysical Coupling
of the Global Aerosol Cycles
Response to omission of SO2 emissions from fossil-fuels,
industry, and bio-fuels:
Annual-mean column-integrated mass change
3.2 Microphysical Coupling
Microphysical Coupling
of the Global Aerosol Cycles
Response to omission of SO2 emissions from
fossil-fuels, industry, and bio-fuels:
Increased burden of
black carbon
 Increased absorption
Decreased internal mixing of
black carbon with sulfate
 Reduced absorption
cross-section
3.2 Microphysical Coupling
Global annual mean surface air temperature
(deviation from 1961-1990)
[°C]
SRES B1
GHG‘s = const
SO4 (anthr.)=0
Constant
concentrations
(GHG‘s + SO4)
observed
simulated
year
Aerosol-Cloud interactions
Warm
Indirect
Aerosol
Effects +
Lohmann
et al.
(1999)
Glaciation
Indirect
Aerosol
Effect
Cloud albedo
_
+
Cloud cover and lifetime
_
Precipitation
_
Cloud droplets
Lohmann (2002)
+
+
Mixed particles
+
Ice crystals
+
Cloud nuclei
Aerosol Microphysics
+
+
Aerosols
+
Emissions
+
Ice nuclei
Chemistry
Aerosol Dynamics
4. Aerosol-Cloud Interactions
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