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and cuts the DNA strands at the points indicated by the arrows. More than 500 restriction
enzymes have been discovered, which cut at different target sites (Table I). DNA cut
by these enzymes may have short, overhanging single-stranded DNA ends called cohesive
termini or 'sticky ends'. This means that the projection incorporating the four terminal
bases (AATT in the above example) can be joined in vitro, by the enzyme DNA ligase,
to another DNA molecule from another completely different source, which has also
been cut by the same restriction enzyme (in this case EcoRI). Thus a hybrid DNA
molecule incorporating a 'foreign' sequence of base pairs can be produced.
TABLE I
Some examples of restriction enzymes
showing their cleavage sites
Micro-organism Name of Recognition Sequences after
producing the enzyme enzyme sequence cleavage
Escherichia coli EcoRI GAATTC G AATTC
CTTAAG CTTAA G
Haemophilus aegyptius Haelll GGCC GG CC
CCGG CC GG
Brevibacterium albidium Ball TGGCCA TGG CCA
ACCGGT ACC GGT
Streptococcus albus Sal I GTCGAC G TCGAC
CAGCTG CAGCT G
Haemophilus influenzae Hind III AAGCTT A AGCTT
TTCGAA TTCGA A
DNA from bacterial pathogens can be extracted from cells fairly easily and purified
without significant change. A different approach is necessary, however, for cloning
materials from some viruses and eukaryotic pathogens, which possess nuclear
membranes. Many viruses do not use DNA to encode genetic information but use
a similar long-chain molecule, ribonucleic acid (RNA). RNA differs from DNA in
that it is composed of a different sugar, ribose, and one different base, uracil, instead
of thymine. Since RNA itself cannot be cloned, it must first be converted to DNA
using the retrovirus enzyme, reverse transcriptase, which synthesises complementary
DNA (cDNA) from an RNA template. Once single-stranded cDNA is synthesised,
the RNA can be removed by alkaline hydrolysis and a complementary second strand
of DNA can be produced by means of another enzyme, DNA polymerase; the second
strand becomes a DNA version of the original RNA sequence. After the addition
of short synthetic linker DNA molecules containing restriction enzyme sites, the
double-stranded DNA product can then be ligated to a plasmid or other suitable vector.
Cloning of eukaryotic cells demands a slightly different approach, because the genes
are frequently interrupted by DNA sequences called introns that are transcribed into
messenger RNA (mRNA) during gene expression and then edited from the mRNA
molecule before translation into proteins. Since bacterial recipients such as Escherichia
coli cannot excise introns from mRNA, edited mRNA must be isolated and reverse-
transcribed to obtain uninterrupted DNA copies of eukaryotic genes which can be
attached to bacterial regulatory elements for expression. It is also possible chemically
to synthesise chains of nucleotides, or even entire genes, in the laboratory.