Rev. sci. tech. Off. int. Epiz., 1 9 9 8 , 1 7 (1), 249-255 Genetic resistance to avian viruses N. Bumstead Institute for Animal Health, Agricultural and Food Research Council, Compton Laboratory Compton Nr Newbury, Berkshire RG16 ONN, United Kingdom Summary V i r a l i n f e c t i o n s of poultry c a n b e c a t a s t r o p h i c in t e r m s of both w e l f a r e a n d e c o n o m i c s , and a l t h o u g h v a c c i n e s h a v e b e e n v e r y s u c c e s s f u l in c o m b a t i n g t h e s e d i s e a s e s , n e w f o r m s of v i r u s e s h a v e e v o l v e d w h i c h p r e s e n t i n c r e a s i n g difficulties for v a c c i n e control. D i f f e r e n c e s in g e n e t i c susceptibility are k n o w n t o exist for m a n y of t h e m a j o r viral p a t h o g e n s of poultry. C o n s e q u e n t l y , a n i n c r e a s e in t h e level of g e n e t i c r e s i s t a n c e p r o v i d e s a possible m e a n s of e n h a n c i n g p r o t e c t i o n of f l o c k s . This is p a r t i c u l a r l y f e a s i b l e w h e r e specific r e s i s t a n c e g e n e s h a v e b e e n identified, a s in t h e c a s e of avian leukosis a n d M a r e k ' s d i s e a s e , a n d t h e d e v e l o p m e n t of g e n e t i c m a p s of t h e c h i c k e n has o f f e r e d n e w possibilities for t h e identification of f u r t h e r r e s i s t a n c e g e n e s . It h a s also b e c o m e c l e a r t h a t t h e r e a r e g e n e t i c d i f f e r e n c e s in t h e r e s p o n s e t o live a t t e n u a t e d v a c c i n e v i r u s e s , a n d n e w possibilities exist t o m a n i p u l a t e t h e g e n e t i c s o f host f l o c k s so t h a t t h e e f f e c t of v a c c i n a t i o n c a n be o p t i m i s e d . Keywords A v i a n leukosis - Disease resistance - Fowl - Genetics - M a r e k ' s disease - Susceptibility -Viruses. Introduction The scale of modern poultry husbandry has generated a situation in which flocks suffer from a limited number of pathogens, but the effects of these in any particular flock can be catastrophic. This is particularly the case for viral infections: for example, infections with Marek's disease in unvaccinated flocks can kill 4 0 % or more of the flock. Other viral infections, such as infectious bursal disease (Gumboro disease) and avian infectious bronchitis virus, can cause infections of comparable severity, while avian retroviruses cause more insidious disease. Vaccines generated by attenuating these viruses have been very successful in controlling these diseases. However, losses still occur, and there is evidence for the emergence, if not the evolution, of increasingly pathogenic variants of several of the viruses, which are able to overcome previously successful vaccines (4, 48). While improved vaccines have been produced, there are limits to the extent to which attenuation can be reduced before the vaccine itself becomes harmful, and other means of controlling infection - or enhancing the effect of vaccines can only be helpful. provided two of the earliest examples of such resistance in animals. In the case of these two viruses, selection for resistance has contributed to control measures, and although the mechanism of this resistance is still not understood, the association of resistance to Marek's disease with the major histocompatibility complex (MHC) still provides the strongest example of an association between the MHC and disease. Nevertheless, in most cases the genes responsible for genetic resistance are unknown. In principle, the selection of birds with higher levels of resistance by assessment of the response to infection through progeny testing is possible, but in reality this is impracticable. Any widespread application of selection for genetic resistance will be dependent on the identification of either the genes responsible, or at least of closely linked genetic markers. The recent development of genetic maps of the chicken genome ( 1 0 , 13, 3 3 ) , and the associated technologies for identifying and isolating genes b y positional cloning, provide a new means of identifying resistance genes. The current state of the genomic map can be viewed at the Roslin Institute W e b site (http://ri.bbsrc.uk). Several research groups are now applying these technologies to identify disease resistance genes. Similar techniques are being used in other species, particularly in mice, to identify resistance genes Differences have been noted in the susceptibility of chickens which may be equally important in chickens ( 5 , 19, 4 3 ) . to many of the principal viral pathogens of poultry, and Chickens are particularly suitable for genetic mapping of these resistance to Marek's disease virus and avian leukosis virus disease resistance genes, due to the potential which exists in 250 Rev. sci. tech. Off. int. Epiz., 17(1] the poultry industry to investigate large groups of defined progeny in relatively homogeneous environments. In addition, chicken diseases and the pathogens which cause them have been studied in depth. Besides the existence of genetic differences in innate susceptibility to disease, differences have also been noted in the response of chickens to vaccines. Selection of chickens which respond particularly well (or particularly uniformly) to vaccination offers another route to greater disease protection. This article will summarise the current state of knowledge of resistance genes in poultry and the possibilities which exist for further identifying resistance genes. Resistance to Marek's disease Differences in genetic resistance to Marek's disease were first established by the early work of Cole (16). Cole subsequently showed strong responses to selection after only two generations, which suggested a simple genetic control ( 1 6 ) . Hanson first reported an association between disease resistance and the chicken MHC ( 2 8 ) , and this was rapidly confirmed by Longenecker et al. (34) and Briles et al. (7). This association remains the clearest example relating polymorphism in the MHC complex to differences in disease susceptibility, although similar associations have since been found in mammals. Although the MHC region has now been clearly shown to contain many genes likely to affect the immunological response to disease, the majority of these are so closely linked as to be inherited as a single unit (a haplotype), and hence effectively as a single gene. In the past, MHC haplotypes in chickens were identified using specific antisera to agglutinate red blood cells, an extremely cheap and efficient identification procedure ( 4 4 ) . However, Pink et al. showed that these antibodies principally identify the B-G complex of cell surface glycoproteins linked to the MHC, rather than the MHC itself (38). Briles et al. were able to show that resistance was associated with the classical MHC rather than the B-G region (8), but the lack of identified recombinants within the MHC itself has prevented further genetic dissection of the region to identify the specific resistance gene within the MHC complex. Extensive sequence data obtained from the MHC region have identified chicken homologues of the principal mammalian MHC genes and have opened up extensive possibilities for new methods of MHC typing, using either restriction fragment polymorphisms or polymerase chain reaction (PCR)-based assays ( 2 6 , 2 7 ) . in the degree of susceptibility to Marek's disease. Immunological comparisons between these lines have identified differences but have not suggested a convincing explanation for the variation in resistance ( 3 9 ) . However, cross-immunisations of lymphocytes between the lines have identified three lymphocyte surface antigens (Bu-1, Thy-1 and Ly-4) which all demonstrate a degree of association with resistance (22, 2 4 ) . Only the gene coding for Bu-1 has been isolated to date (45). This gene, now designated CHB6, is a highly glycosylated membrane protein expressed on chicken B lymphocytes through most of their development. The gene is polymorphic between lines 6 and 7 and shows a significant association with resistance in crosses between these lines, although it accounts for only a small proportion of the difference in resistance between the lines ( 4 5 ) . To date, no mammalian homologue of the gene has been identified, and the mechanism of resistance remains unknown. 1 A quantitative PCR assay has recently been developed which allows the replication of Marek's disease virus in infected tissues to be assessed throughout infection (12). Comparisons of viral replication in inbred line N (a line homozygous for a resistant MHC haplotype), line 6 and line 7 show very different patterns through the course of infection (N. Bumstead, unpublished results) (Fig.l). l X 2 2 Fig. 1 Numbers of Marek's disease genomes per cell for resistant and susceptible inbred lines of chickens The susceptible line 7 birds show much higher levels of viral load from the very early stages of infection, a condition which persists until eventual death from tumour development. In contrast, the resistant lines show much lower levels of viral replication, which in the case of line 6 peak fall below detectable levels. Birds of line N have low viral levels throughout, but these levels persist at a stage when virus is no longer detectable in line 6 birds. In F 2 crosses between lines 6 and 7 , birds with higher viral levels early in infection were more likely to develop tumours subsequently. Thus it seems probable that a significant element of the genetic resistance, whether MHC-associated or non-MHC-associated, is due to control of viral replication in the early stages of infection. This 2 l 1 Although the MHC haplotypes make a substantial contribution to resistance to Marek's disease, other genes also contribute to resistance, and these have been extensively investigated in comparisons between inbred lines 6 and 7 . These lines share a common MHC haplotype but differ greatly 2 1 2 Rev. sci. tech. Off. int. Epiz., 17 (1 ) resembles the genetic resistance seen for cytomegalovirus in mice, which is also reflected in differences in viral replication, and for which there is also both MHC- and non-MHCassociated resistance ( 2 5 ) . In mice, a strong resistance gene, Cmvl, has been mapped to the natural killer (NK) region of chromosome 6 ( 2 1 , 4 3 ) . Precisely which gene within this region is responsible for resistance has not yet been identified; however, it is known to affect NK cell activity ( 4 2 ) . The responsible gene most probably corresponds to one of the receptors present in this region which both enhance and control NK activity ( 3 2 , 4 9 ) . Attempts are now underway to map the non-MHC-associated Marek's disease-resistance genes in chickens, and preliminary results have identified a number of candidate resistance genes (H. Cheng, personal communication; N. Bumstead, unpublished results). Resistance to avian leukosis virus The best understood example of genes influencing susceptibility to viral infection in chickens are the genes which code for the receptors for avian leukosis viruses (ALV). ALVs can be divided into subgroups on the basis of viral envelope properties ( 2 9 , 4 6 , 4 7 ) . The A and B subgroups (15) occur as common pathogenic viruses in the field and are a cause of reduced growth rate or egg production (23). Susceptibility to infection for A and B subgroups is inherited in each case as a single dominant gene, which represents the cellular receptor for that subgroup of virus ( 3 5 , 4 1 ) . Selection for resistant genotypes by inoculation of the chorioallantoic membrane of eggs with a Rous sarcoma virus pseudotype (a laboratory strain of related virus adapted to have the characteristic envelope protein of the A or B subgroups of ALV) generates transformed pocks on the membrane of susceptible embryos. Although potentially capable of discriminating resistant and susceptible embryos, this process is laborious, can be prone to error and involves substantial progeny testing. Improved methods for identifying resistant birds have been developed, culminating in the recent identification and cloning of the receptor for the A subgroup virus (50). The receptor has now been shown to be related to the low density lipoprotein receptor ( 3 ) . Identification of the receptor opens up the possibility of accurate identification of genotypes by DNA screening, though selection has been largely superseded by eradication of the virus from breeding flocks by virological testing. The extent to which ALV infects flocks derived from the breeding flocks is unknown, and there is some concern that since parental flocks no longer secrete maternal antibody and are not subject to selection for resistance, these flocks may be inadequately protected. Exogenous retroviral infections have also given rise to endogenous retroviral genomes embedded in chicken chromosomes and inherited as chicken genes, which in some 251 cases express viral proteins or, rarely, infectious virus (reviewed by Crittenden [18]). Endogenous viral genomes which express the viral coat protein can block exogenous infection by viruses of the same subgroup, and thus provide a form of resistance ( 6 ) . A new, recently identified form of ALV has a novel envelope protein and is now widespread in commercial flocks ( 3 6 ) . This apparently new virus subgroup appears to be a recombinant between the exogenous virus and an endogenous viral genome ( 2 ) . No chickens resistant to infection by this new virus have been identified to date. Resistance to infectious bursal disease (Gumboro disease) Infectious bursal disease (Gumboro disease) virus (IBDV) is a birnavirus, with a simple bi-segmented double-stranded RNA genome. The virus shows extreme specificity for maturing B lymphocytes and causes a cytolytic infection of these cells, particularly in the bursa of Fabricius in three-to five-week-old birds. Although IBDV infection can cause mortality, greater losses occur through the damage caused by infection to the immune system, which allows subsequent infection by other pathogens and reduces the effectiveness of vaccination. Comparisons between inbred lines of chickens show large differences in susceptibility of different genotypes to the disease (Fig. 2 ) . Some lines show little or no mortality and limited damage to bursal lymphocytes, while the BrL (Brown Leghorn) line in particular showed high levels of mortality and extreme destruction of the bursa, even in surviving birds (11). In crosses between resistant and susceptible lines, resistance was inherited as a dominant trait. Inheritance of resistance in these crosses, the extreme tissue specificity of the virus, the simplicity of the viral genome and the very rapid and short-lived nature of the infection all suggest that resistance might be due to a very small number of genes. However, the genes responsible are unknown at present. Fig. 2 Mortality of inbred lines of chickens following infection with infectious bursal disease (Gumboro disease) virus 252 Resistance to avian infectious bronchitis Avian infectious bronchitis virus (IBV) is a cause of acute respiratory disease in chickens. Infection with IBV causes damage to the trachea; secondary bacterial infection of the damaged tissue can then cause asphyxiation and death. Comparison of inbred lines showed large differences in susceptibility to the trait (Fig. 3 ) . The differences between the inbred lines were inherited in crosses between resistant and susceptible lines and were similar whether virus alone, or a combination of viruses and pathogenic bacteria, was inoculated (9). There were only small differences in resistance when bacteria were inoculated alone, which did not correlate with resistance to IBV, so that the differences seen with viral infection are likely to reflect differences in the damage caused by IBV itself. Comparison of the replication of IBV in the visceral tissues of resistant and susceptible birds showed little variation between the host genotypes ( 1 7 ) , which suggests that resistance affects the extent of the disease at the primary site of the infection in the trachea. In mice, resistance to the equivalent murine coronaviruses has been ascribed to cellular receptors ( 1 4 ) , but these have not yet been identified in chickens. Rev. sci. tech. Off. int. Epiz., 17 (1| Fadly and Bacon and Bumstead et al. have shown similar differences in response to vaccines for infectious bursal disease, which may also be due to the interaction of vaccine and the MHC (11, 20). At present there is no clear indication of whether these differences in response are due to differences in MHC presentation by either the class I or class II molecules, but this is an exciting possibility. The importance of antigen presentation and the peptide-binding specificity of the MHC has been demonstrated in mammals ( 4 0 ) and is likely to be similar in chickens ( 3 0 , 3 7 ) . Indeed, since the chicken MHC appears to be simpler and reduced relative to mammalian MHCs, these differences may be correspondingly greater (31). The possibility exists of improving the level and consistency of response to vaccination by selection of the host MHC, and the importance of these genetic differences can only increase with the advent of simplified molecular vaccines. Conclusion Current knowledge of genetic resistance to viral diseases in birds is at an early but exciting stage. There is sufficient information to suggest that large differences in susceptibility exist for many, if not all, of the major diseases of poultry, but in most cases little is known of the genes that are responsible for these differences in resistance. However, recent advances in molecular biology have transformed the possibilities for identifying these genes. To an even greater extent, the development of genomic mapping should enable the identification of many of these genes, either directly in chickens or by identifying chicken homologues of genes mapped in other species. Once resistance genes have been identified, selection for those genes in poultry flocks should be possible. Identification of function of the genes may also suggest other methods of pharmacological or immunological control. Fig. 3 Mortality in inbred lines of chickens following infection with avian infectious bronchitis virus There is already very extensive understanding of avian viral pathogens, and if this knowledge can be allied to detailed understanding of the mechanisms of host resistance to Genetic differences in response to vaccines In addition to the genetic differences in resistance described above, there is also evidence that chickens vary in response to the attenuated viruses currently used as vaccines. Bacon and Witter have shown MHC-related differences in the protection of birds vaccinated with different Marek's disease vaccine strains (1). Different MHC haplotypes responded best to vaccination with each of the three different categories of vaccine strain (attenuated pathogenic virus, naturally occurring non-pathogenic virus or herpesvirus of turkeys). disease, poultry should provide an ideal environment in which to study the interaction and evolution of viruses and their hosts. This is particularly the case for the MHC, which plays a strong role both in innate resistance and response to vaccines in chickens. The recent advances in understanding the function of MHC molecules and the organisation of the chicken MHC suggest that the identification and utilisation of the molecular mechanisms underlying these associations should soon be possible. 253 Rev. sci. tech. Off. int. Epiz., 17(1) Résistance génétique aux virus aviaires N. Bumstead Résumé Les i n f e c t i o n s v i r a l e s a v i a i r e s p e u v e n t e n t r a î n e r des conséquences c a t a s t r o p h i q u e s sur le plan é c o n o m i q u e c o m m e sur celui du b i e n - ê t r e a n i m a l e t m ê m e si d e s v a c c i n s se s o n t a v é r é s t r è s e f f i c a c e s d a n s la lutte c o n t r e c e s m a l a d i e s , de n o u v e l l e s f o r m e s de virus s o n t a p p a r u e s qui r e n d e n t c e t y p e de p r o p h y l a x i e de plus e n plus difficile. On sait qu'il existe d e s d i f f é r e n c e s de sensibilité g é n é t i q u e à n o m b r e d ' a g e n t s p a t h o g è n e s p a r m i les plus i m p o r t a n t s pour les volailles. Le r e n f o r c e m e n t de la r é s i s t a n c e g é n é t i q u e c o n s t i t u e d o n c un m o y e n potentiel d ' a m é l i o r e r la p r o t e c t i o n d e s é l e v a g e s . Ceci est n o t a m m e n t possible lorsque d e s g è n e s de r é s i s t a n c e s p é c i f i q u e ont é t é identifiés, c o m m e c ' e s t le c a s pour la l e u c o s e aviaire et pour la m a l a d i e de M a r e k , e t l ' é t a b l i s s e m e n t d e c a r t e s g é n é t i q u e s pour les volailles d e v r a i t p e r m e t t r e d'identifier d ' a u t r e s g è n e s de r é s i s t a n c e . Il est, par ailleurs, é v i d e n t qu'il existe d e s d i f f é r e n c e s g é n é t i q u e s pour ce qui e s t d e la r é p o n s e a u x v a c c i n s à virus v i v a n t s a t t é n u é s , e t les n o u v e l l e s possibilités de m a n i p u l a t i o n g é n é t i q u e p o u r r a i e n t p e r m e t t r e d'optimiser les effets de la v a c c i n a t i o n c h e z les volailles. Mots-clés Génétique - Leucose aviaire - M a l a d i e de M a r e k - Résistance aux maladies - Sensibilité -Virus-Volailles. Resistencia genética a los virus aviares N. Bumstead Resumen Las i n f e c c i o n e s v í r i c a s d e las a v e s d e c o r r a l p u e d e n r e s u l t a r c a t a s t r ó f i c a s , t a n t o e n t é r m i n o s e c o n ó m i c o s c o m o de b i e n e s t a r a n i m a l . A u n q u e el uso de v a c u n a s se ha r e v e l a d o m u y e f i c a z p a r a c o m b a t i r e s e tipo de e n f e r m e d a d e s , e n los últimos t i e m p o s h a n h e c h o a p a r i c i ó n n u e v o s tipos de virus cuyo control por v a c u n a c i ó n p l a n t e a c r e c i e n t e s d i f i c u l t a d e s . S e s a b e q u e , p a r a m u c h o s de los p r i n c i p a l e s p a t ó g e n o s víricos q u e a f e c t a n a las a v e s d e c o r r a l , e x i s t e n d i f e r e n c i a s d e s u s c e p t i b i l i d a d de o r i g e n g e n é t i c o . En este s e n t i d o , un posible m é t o d o p a r a p r o t e g e r c o n m á s e f i c a c i a a las b a n d a d a s c o n s i s t e en a c r e c e n t a r el nivel de r e s i s t e n c i a g e n é t i c a . Ello resulta e s p e c i a l m e n t e f a c t i b l e c u a n d o se h a n i d e n t i f i c a d o p r e v i a m e n t e g e n e s q u e c o n f i e r e n r e s i s t e n c i a , c o m o o c u r r e c o n la l e u c o s i s aviar o la e n f e r m e d a d d e M a r e k . Por otro l a d o , la e l a b o r a c i ó n d e m a p a s g e n é t i c o s de los pollos ha a b i e r t o las p u e r t a s a la i d e n t i f i c a c i ó n de otros g e n e s de r e s i s t e n c i a . S e ha o b s e r v a d o a s i m i s m o q u e e x i s t e n d i f e r e n c i a s g e n é t i c a s e n la r e s p u e s t a de los a n i m a l e s a las v a c u n a s c o n virus vivos a t e n u a d o s , h e c h o q u e s u g i e r e n u e v a s posibilidades p a r a m a n i p u l a r la d o t a c i ó n g e n é t i c a d e las b a n d a d a s h u é s p e d e s y optimizar así los e f e c t o s d e la v a c u n a c i ó n . Palabras clave Aves de corral - Enfermedad de M a r e k - Genética - Leucosis aviar - Resistencia a la e n f e r m e d a d - S u s c e p t i b i l i d a d - Virus. 254 Rev. sci. tech. Off. int. Epiz., 17 (1) References 1. Bacon L.D. & Witter R.L. (1994). - B haplotype influence on the relative efficacy of Marek's disease vaccines in commercial chickens. Poult. Sci., 73 (4), 481-487. 2. 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