Louise-Amélie Schmitt PhD student Key skills OS GNU/Linux (Fedora, CentOS, Ubuntu), Mac, Windows Languages Python, JavaScript, Java, C, C++, Perl, D, PHP, R Other SQL, script shell, HTML, CSS, Ajax, LATEX Work experience 2012 PhD student, Bordeaux Laboratory of Computer Science Research (LaBRI) - Bordeaux (Current) Bioinformatics Center (CBiB), Bordeaux. Development of viral genomic sequences specific models { Metagenomic data analysis in collaboration with the l’Institut National de Recherche Agronomique { Creation of virale genomes specific signatures { Tools development for alignment-free viral sequences classification 2012 Teaching Assistant, Bordeaux 1 University Institute of Technology, Computer science (Current) department, Bordeaux. { Teaching the basics of UNIX-like systems and shell scripting to first-year students { Project supervision scheduled for semester 2 with second-year students 2012 Genome Biology Computational Support, EMBL, Heidelberg. (6 months) { Support, communication and teaching on the Galaxy workflow manager, { Development and release of the GeneCore Bridge, pipeline to pre-process and store NextGeneration Sequencing data from the in-house LIMS in Galaxy and BioArray Software Environment (BASE), { Deployment of Galaxy on the EMBL cluster (PBS Pro) 2012 Consulting, Sophia Genetics, Lausanne. (2 months) SNP calling on cancer-related events and clinical data analysis pipeline optimization 2011 Internship: Functional Genomics Center, EMBL, Heidelberg. (6 months) { Deployment of the Galaxy platform in production and optimization of resources management, { Plug-in development for Galaxy including graphical reports (QA, read mapping, etc.), { Creation of a pipeline prototype for automated NGS data loading Galaxy 2010 Internship: JEE interface building for the ACoM software, LaBRI, Bordeaux. (3 months) Development as a five-person team of a web interface to AcoM (a command-line elementary modes and metabolic networks analysis program) featuring file preprocessing automation, statistical analysis, and results display using interactive graphs and charts. 2009 Internship: Online storage and database building for electrophysiological record(2 months) ings archiving with PHP and MySQL, UMR5227, Movement Adaptation Cognition Laboratory, Bordeaux. Development of a web interface + database with a secure access over the Internet LaBRI - 351, cours de la Libération F-33405 Talence cedex CBiB - 146 rue Léo Saignat 33076 Bordeaux cedex H +33 6 73 34 14 36 • B [email protected] • 30 years old 1/2 Education 2011 Master’s degree in bioinformatics, University of Bordeaux 1, Valedictorian of year 2. Option: Object-oriented programming (C++, Java) 2008 Licence degree in Cellular Biology and Physiology, University of Bordeaux 2. Options: Informatics (Python, PHP/MySQL) and Neurosciences (neurophysiology and behavior) 2005 Licence degree in Languages Applied to International Busines, Faculty of Litterature, Languages, Arts and Social Studies, La Rochelle. America-oriented curriculum (English, Spanish, Portuguese), including a full semester spent in Spain (5 months) through the Erasmus program. Introduction to simultaneous interpretation and patent translating Languages English Fluent (spoken daily for 1 year) Spanish Excellent (5-month stay in Spain) Portuguese Read Miscellaneous { Author and illustrator on bioinfo-fr.net { Created and now managing bioinfo.labri.fr LaBRI - 351, cours de la Libération F-33405 Talence cedex CBiB - 146 rue Léo Saignat 33076 Bordeaux cedex H +33 6 73 34 14 36 • B [email protected] • 30 years old 2/2