Louise-Amélie Schmitt PhD student Key skills

Louise-Amélie Schmitt
PhD student
Key skills
OS GNU/Linux (Fedora, CentOS, Ubuntu), Mac, Windows
Languages Python, JavaScript, Java, C, C++, Perl, D, PHP, R
Other SQL, script shell, HTML, CSS, Ajax, L
A
T
EX
Work experience
2012
(Current)
PhD student ,Bordeaux Laboratory of Computer Science Research (LaBRI) - Bordeaux
Bioinformatics Center (CBiB), Bordeaux.
Development of viral genomic sequences specific models
{ Metagenomic data analysis in collaboration with the l’ Institut National de Recherche
Agronomique
{Creation of virale genomes specific signatures
{Tools development for alignment-free viral sequences classification
2012
(Current)
Teaching Assistant ,Bordeaux 1 University Institute of Technology, Computer science
department, Bordeaux.
{Teaching the basics of UNIX-like systems and shell scripting to first-year students
{Project supervision scheduled for semester 2 with second-year students
2012
(6 months)
Genome Biology Computational Support,EMBL, Heidelberg.
{Support, communication and teaching on the Galaxy workflow manager,
{ Development and release of the GeneCore Bridge , pipeline to pre-process and store Next-
Generation Sequencing data from the in-house LIMS in Galaxy and BioArray Software Environ-
ment (BASE),
{Deployment of Galaxy on the EMBL cluster (PBS Pro)
2012
(2 months)
Consulting,Sophia Genetics, Lausanne.
SNP calling on cancer-related events and clinical data analysis pipeline optimization
2011
(6 months)
Internship: Functional Genomics Center,EMBL, Heidelberg.
{Deployment of the Galaxy platform in production and optimization of resources management,
{Plug-in development for Galaxy including graphical reports (QA, read mapping, etc.),
{Creation of a pipeline prototype for automated NGS data loading Galaxy
2010
(3 months)
Internship: JEE interface building for the ACoM software,LaBRI, Bordeaux.
Development as a five-person team of a web interface to AcoM (a command-line elementary
modes and metabolic networks analysis program) featuring file preprocessing automation, statistical
analysis, and results display using interactive graphs and charts.
2009
(2 months)
Internship: Online storage and database building for electrophysiological record-
ings archiving with PHP and MySQL ,UMR5227, Movement Adaptation Cognition
Laboratory, Bordeaux.
Development of a web interface + database with a secure access over the Internet
LaBRI - 351, cours de la Libération F-33405 Talence cedex
CBiB - 146 rue Léo Saignat 33076 Bordeaux cedex
H+33 6 73 34 14 36 •[e-mail] •30 years old
1/2

Education
2011 Master’s degree in bioinformatics,University of Bordeaux 1, Valedictorian of year 2.
Option: Object-oriented programming (C++, Java)
2008 Licence degree in Cellular Biology and Physiology,University of Bordeaux 2.
Options: Informatics (Python, PHP/MySQL) and Neurosciences (neurophysiology and behavior)
2005 Licence degree in Languages Applied to International Busines ,Faculty of Litterature,
Languages, Arts and Social Studies, La Rochelle.
America-oriented curriculum (English, Spanish, Portuguese), including a full semester spent in
Spain (5 months) through the Erasmus program. Introduction to simultaneous interpretation and
patent translating
Languages
English Fluent (spoken daily for 1 year)
Spanish Excellent (5-month stay in Spain)
Portuguese Read
Miscellaneous
{Author and illustrator on bioinfo-fr.net
{Created and now managing bioinfo.labri.fr
LaBRI - 351, cours de la Libération F-33405 Talence cedex
CBiB - 146 rue Léo Saignat 33076 Bordeaux cedex
H+33 6 73 34 14 36 •[e-mail] •30 years old
2/2